20220518_基因组contig与scaffold的N50大小统计
01 assembly_stats软件安装
代码语言：javascript
复制(base) root@dell-server:/home/# pip install assembly_stats
02 assembly_stats软件使用方法
03 assembly_stats软件统计结果展示
代码语言：javascript
复制(base) root@dell-server:/home/# assembly_stats genome.fasta
{
"Contig Stats": {
"L10": 1,
"L20": 3,
"L30": 6,
"L40": 9,
"L50": 13,
"N10": 14612419,
"N20": 12596737,
"N30": 10356262,
"N40": 7972914,
"N50": 6039544,
"gc_content": 32.21673534307239,
"longest": 15111501,
"mean": 323711.75977011496,
"median": 67267.0,
"sequence_count": 870,
"shortest": 980,
"total_bps": 281629231
},
"Scaffold Stats": {
"L10": 0,
"L20": 1,
"L30": 2,
"L40": 3,
"L50": 5,
"N10": 45097400,
"N20": 25348148,
"N30": 23763320,
"N40": 21293100,
"N50": 19542739,
"gc_content": 32.21673534307239,
"longest": 45097400,
"mean": 4024417.5857142857,
"median": 4077.0,
"sequence_count": 70,
"shortest": 1126,
"total_bps": 281709231
}
}
