安装SparkR颇费周折,网上看到的各种安装方法,其实最终测试都很不好用。可能是国内有些网站被屏蔽的关系吧。
如install_github("amplab-extras/SparkR-pkg", subdir="pkg"),这条命令,就卡在SBT的环节,即使下载了SBT进行安装也是不行。其错误报码是:“Invalid or corrupt jarfile sbt/sbt-launch-0.13.6.jar”
单独在Spark源码下编译也是无法成功,虽然利用R -e "devtools::install('.')"这样的命令能够生成SparkR的包,但是进行测试的时候,发现网络连接没通过,其核心原因还是因为没有生成sparkr-assembly-0.1.jar,缺少这个当然所有都无法进行联调。
编译完成之后,利用RStudio进行了第一个测试,sparkR进行Spark Pi测试,测试通过,非常开心。
这是在SparkR中输出的结果。
library(SparkR) [SparkR] Initializing with classpath /home/ndscbigdata/R/x86_64-pc-linux-gnu-library/3.2/SparkR/sparkr-assembly-0.1.jar > > #args <- commandArgs(trailing = TRUE) > > #if (length(args) < 1) { > # print("Usage: pi <master> [<slices>]") > # q("no") > #} > > #sc <- sparkR.init(master="spark://ubuntu-bigdata-5:7077","PiR"); > sc <- sparkR.init(master="local", "PiR") Launching java with command /usr/lib/jvm/java-8-oracle/bin/java -Xmx512m -cp '/home/ndscbigdata/R/x86_64-pc-linux-gnu-library/3.2/SparkR/sparkr-assembly-0.1.jar:' edu.berkeley.cs.amplab.sparkr.SparkRBackend /tmp/RtmpGq7K9F/backend_port4ae6710a585b 15/10/09 09:31:27 INFO Slf4jLogger: Slf4jLogger started > > slices <- ifelse(length(args) > 1, as.integer(args[[2]]), 2) > > n <- 100000 * slices > > piFunc <- function(elem) { rands <- runif(n = 2, min = -1, max = 1) val <- ifelse((rands[1]^2 rands[2]^2) < 1, 1.0, 0.0) val } > > > piFuncVec <- function(elems) { message(length(elems)) rands1 <- runif(n = length(elems), min = -1, max = 1) rands2 <- runif(n = length(elems), min = -1, max = 1) val <- ifelse((rands1^2 rands2^2) < 1, 1.0, 0.0) sum(val) } > > rdd <- parallelize(sc, 1:n, slices) > count <- reduce(lapplyPartition(rdd, piFuncVec), sum) 15/10/09 09:31:28 WARN TaskSetManager: Stage 0 contains a task of very large size (391 KB). The maximum recommended task size is 100 KB. 100000 15/10/09 09:31:29 INFO RRDD: Times: boot = 0.768 s, init = 0.003 s, broadcast = 0.000 s, read-input = 0.001 s, compute = 0.066 s, write-output = 0.000 s, total = 0.838 s 100000 15/10/09 09:31:29 INFO RRDD: Times: boot = 0.004 s, init = 0.002 s, broadcast = 0.000 s, read-input = 0.001 s, compute = 0.062 s, write-output = 0.000 s, total = 0.069 s > cat("Pi is roughly", 4.0 * count / n, "n") Pi is roughly 3.14792 > cat("Num elements in RDD ", count(rdd), "n") 15/10/09 09:31:29 WARN TaskSetManager: Stage 1 contains a task of very large size (391 KB). The maximum recommended task size is 100 KB. 15/10/09 09:31:29 INFO RRDD: Times: boot = 0.005 s, init = 0.002 s, broadcast = 0.000 s, read-input = 0.001 s, compute = 0.000 s, write-output = 0.000 s, total = 0.008 s 15/10/09 09:31:29 INFO RRDD: Times: boot = 0.004 s, init = 0.002 s, broadcast = 0.000 s, read-input = 0.001 s, compute = 0.000 s, write-output = 0.000 s, total = 0.007 s Num elements in RDD 200000 15/10/09 09:31:29 WARN TaskSetManager: Stage 2 contains a task of very large size (391 KB). The maximum recommended task size is 100 KB. 15/10/09 09:31:29 INFO RRDD: Times: boot = 0.004 s, init = 0.002 s, broadcast = 0.000 s, read-input = 0.001 s, compute = 0.000 s, write-output = 0.000 s, total = 0.007 s 15/10/09 09:31:29 INFO RRDD: Times: boot = 0.006 s, init = 0.002 s, broadcast = 0.000 s, read-input = 0.001 s, compute = 0.000 s, write-output = 0.000 s, total = 0.009 s 15/10/09 09:31:29 WARN TaskSetManager: Stage 3 contains a task of very large size (391 KB). The maximum recommended task size is 100 KB. 15/10/09 09:31:29 INFO RRDD: Times: boot = 0.004 s, init = 0.001 s, broadcast = 0.000 s, read-input = 0.001 s, compute = 0.000 s, write-output = 0.000 s, total = 0.006 s 15/10/09 09:31:29 INFO RRDD: Times: boot = 0.004 s, init = 0.002 s, broadcast = 0.000 s, read-input = 0.001 s, compute = 0.000 s, write-output = 0.001 s, total = 0.008 s