单细胞门户网站哪个更齐全

2021-04-13 14:43:22 浏览数 (1)

生物信息学资源基本上都是欧洲的EBI的sanger研究所和美国的MIT的broad研究所创造和整理,单细胞领域也不例外:

首先看EBI的sanger研究所

链接是:https://www.ebi.ac.uk/gxa/sc/release-notes.html

最新版:Single Cell Expression Atlas release 15 – March 2021

数据详情:

  • Ensembl 99 / Ensembl Genomes 46 / WormBase ParaSite 14 gene annotations.
  • This release contains 184 single cell RNA-Seq studies, consisting of 5,890,292 cells, of which 4,104,531 passed our QC from 14 different species.

再看MIT的broad研究所

链接是:https://singlecell.broadinstitute.org/single_cell

326 total studies found

其它单位也有一下零零散散的资源

比如美国-德克萨斯大学休斯顿健康科学中心的,链接是:https://bioinfo.uth.edu/scrnaseqdb/

scRNASeqDB database, which contains 36 human single cell gene expression data sets collected from Gene Expression Omnibus (GEO), involving 8910 cells from 174 cell groups.

细分领域就更多了

SC2disease: a manually curated database of single-cell transcriptome for human diseases

链接:https://academic.oup.com/nar/article/49/D1/D1413/5917662

scREAD: A Single-Cell RNA-Seq Database for Alzheimer's Disease

链接:https://www.sciencedirect.com/science/article/pii/S2589004220309664

This portal provides access to high quality data and web-based applications created for the benefit of the global research community.

链接:https://portal.brain-map.org/atlases-and-data/rnaseq

大家最常用的是哪些呢?或者说有哪些是我没有列出来的,你可以推荐的呢?欢迎留言哦!

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